פרופ' אסף זריצקי

Machine learning inference of continuous single-cell state transitions during myoblast differentiation and fusion

Amit Shakarchy, Giulia Zarfati, Adi Hazak, Reut Mealem, Karina Huk, Tamar Ziv, Ori Avinoam, Assaf Zaritsky

(Figure presented.) The prediction certainty of machine learning classification models can be used as a continuous measurement to quantitatively monitor single cell state transitions, as demonstrated for myoblast differentiation during muscle fiber formation. Live imaged single myoblast continuous differentiation states are computationally derived from motility and actin dynamics. The model distinguishes between cells that differentiated but failed to fuse to predict molecules specifically involved in fusion, as well as changes in actin dynamics. Mass spectrometry supports these in silico predictions and suggests novel fusion and maturation regulators downstream of differentiation. p38 is essential for the transition from terminal differentiation to fusion.

שפת פרסום אנגלית
דפים 217-241
כתב עת Molecular Systems Biology
כרך 20
נושא מספר 3
סטטוס פרסום פורסם - 04.03.2024

Keywords

Differentiation
Machine Learning
Myoblast Fusion
Myogenesis
State Transition

ASJC Scopus subject areas

Information Systems
General Biochemistry, Genetics and Molecular Biology
General Immunology and Microbiology
General Agricultural and Biological Sciences
Computational Theory and Mathematics
Applied Mathematics
גישה למסמך
10.1038/s44320-024-00010-3
קבצים וקישורים אחרים
Link to publication in Scopus