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Engineering reaction networks by sequential signal processing

Indrajit Maity, Dharm Dev, Rivka Cohen-Luria, Nathaniel Wagner, Gonen Ashkenasy

The study of dynamic molecular systems opens new opportunities for the design of networks presenting life-like behavior, including regulation modules that, following triggering, induce downstream activity. To this aim, we report on new signaling pathways in synthetic, peptide-based networks, achieved by stepwise manipulation of bistable functionality. The studied reactions generate two distinct steady-state (SS) signals, low SS and high SS. Two different pathways are successfully implemented to control the system rewiring: (1) a “switch and erase” function via alternating application of external chemical and physical constraints and (2) alteration of the order of addition of the network components during the reaction, hence converting one type of signal into the other without changing the overall mass balance. Our study presents a unique example of sequential switch processing and signal transduction in a homogeneous medium, implying a new approach toward the construction of complex systems, potentially useful as components of future artificial cells.

Publication language English
Pages 1132-1146
Volume 10
Issue number 4
Publication status Published - 11.04.2024

Keywords

SDG3: Good health and well-being
bistability
peptide materials
replication chemistry
synthetic networks
systems chemistry
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ASJC Scopus subject areas

General Chemistry
Biochemistry
Environmental Chemistry
General Chemical Engineering
Biochemistry, medical
Materials Chemistry