Prof. Michal Ziv-Yukelson

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On Almost Monge All Scores Matrices

The all scores matrix of a grid graph is a matrix containing the optimal scores of paths from every vertex on the first row of the graph to every vertex on its last row. This matrix is commonly used to solve diverse string comparison problems. All scores matrices have the Monge property, and this was exploited by previous works that used all scores matrices for solving various problems. In this paper, we study an extension of grid graphs that contain an additional set of edges, called bridges. Our main result is to show several properties of the all scores matrices of such graphs. We also apply these properties to obtain an O(r(nm+ n2)) time algorithm for constructing the all scores matrix of an m× n grid graph with r bridges and bounded integer weights.

Publication language English
Pages 47-68
Journal Algorithmica
Volume 81
Issue number 1
Publication status Published - 15.01.2019

Keywords

All path score computations
DIST matrices
Longest common subsequences
Monge matrices
Multiple-source shortest-paths
Sequence alignment

ASJC Scopus subject areas

General Computer Science
Computer Science Applications
Applied Mathematics
Access to Document
10.1007/s00453-018-0432-7
Other files and links
Link to publication in Scopus