Mark Last

Senior Academic

Penalty term based suitable fuzzy intuitionistic possibilistic clustering

analyzing high dimensional gene expression cancer database

S. R. Kannan, Esha Kashyap, Mark Last, Tzung Pei Hong

The aim of this paper is to identify the co-expressed potential genes that may serve for the development of the portions of normal or tumor. This paper differentiates the co-expressed genes into normal samples and tumor samples from gene expression dataset GSE25066. Since the dataset has vague boundaries and having common characteristics between the clusters, identifying the subgroups contain similar gene expression is really a tricky task one. Therefore, this paper introduces an effective fuzzy iterative clustering algorithm by incorporating kernel function, possibilistic c-means, fuzzy memberships, neighborhood information, median of neighboring objects and penalty term. The performances of the proposed clustering techniques have been shown through the succession experimental works on GSE25066. The effects of clustering results have been proved through comparing the resulted classes with ground truth.

Publication language English
Pages 9839-9857
Journal Soft Computing
Volume 25
Issue number 15
Publication status Published - 01.08.2021

Keywords

Big data
Cancer database
Fuzzy clustering
Neighboring objects
Penalty term

ASJC Scopus subject areas

Theoretical Computer Science
Software
Geometry and Topology

Sustainable Development Goals

SDG 3 - Good Health and Well-being
Access to Document
10.1007/s00500-020-05321-9
Other files and links
Link to publication in Scopus