Laboratory for Systems Chemistry

Prof. Gonen Ashkenasy Research Group

Competition and cooperation in dynamic replication networks

Zehavit Dadon, Nathaniel Wagner, Samaa Alasibi, Manickasundaram Samiappan, Rakesh Mukherjee, Gonen Ashkenasy

The simultaneous replication of six coiled-coil peptide mutants by reversible thiol-thioester exchange reactions is described. Experimental analysis of the time dependent evolution of networks formed by the peptides under different conditions reveals a complex web of molecular interactions and consequent mutant replication, governed by competition for resources and by autocatalytic and/or crosscatalytic template-assisted reactions. A kinetic model, first of its kind, is then introduced, allowing simulation of varied network behaviour as a consequence of changing competition and cooperation scenarios. We suggest that by clarifying the kinetic description of these relatively complex dynamic networks, both at early stages of the reaction far from equilibrium and at later stages approaching equilibrium, one lays the foundation for studying dynamic networks out-ofequilibrium in the near future.

Publication language English
Pages 648-654
Volume 21
Issue number 2
Publication status Published - 07.01.2015

Keywords

Dynamic combinatorial chemistry
Peptides
Reaction networks
Self-replication
Systems chemistry

ASJC Scopus subject areas

Catalysis
Organic Chemistry
Access to Document
10.1002/chem.201405195
Other files and links
Link to publication in Scopus