Danny Barash

Senior Academic

RiboD

A comprehensive database for prokaryotic riboswitches

Sumit Mukherjee, Sukhen Das Mandal, Nikita Gupta, Matan Drory-Retwitzer, Danny Barash, Supratim Sengupta

Riboswitches are cis-regulatory non-coding genomic segments that control the expression of downstream genes by undergoing conformational change upon ligand binding. We present a comprehensive database of prokaryotic riboswitches that allows the user to search for riboswitches using multiple criteria, extract information about riboswitch location and gene/operon it regulates. RiboD provides a very useful resource that can be utilized for the better understanding of riboswitch-based gene regulation in bacteria and archaea. Availability and implementation: RiboD can be freely accessed on the web at http://ribod.iiserkol.ac.in/.

Publication language English
Pages 3541-3543
Journal Bioinformatics
Volume 35
Issue number 18
Publication status Published - 15.09.2019

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics