Assaf Zaritsky

Senior Academic

Decoupling global biases and local interactions between cell biological variables

Assaf Zaritsky, Uri Obolski, Zhuo Gan, Carlos R. Reis, Zuzana Kadlecova, Yi Du, Sandra L. Schmid, Gaudenz Danuser

Analysis of coupled variables is a core concept of cell biological inference, with co-localization of two molecules as a proxy for protein interaction being a ubiquitous example. However, external effectors may influence the observed co-localization independently from the local interaction of two proteins. Such global bias, although biologically meaningful, is often neglected when interpreting co-localization. Here, we describe DeBias, a computational method to quantify and decouple global bias from local interactions between variables by modeling the observed co-localization as the cumulative contribution of a global and a local component. We showcase four applications of DeBias in different areas of cell biology, and demonstrate that the global bias encapsulates fundamental mechanistic insight into cellular behavior.

Publication language English
Journal eLife
Volume 6
Publication status Published - 13.03.2017
e22323

ASJC Scopus subject areas

General Neuroscience
General Biochemistry, Genetics and Molecular Biology
General Immunology and Microbiology
Access to Document
10.7554/eLife.22323
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Link to publication in Scopus