Publications:

 

[1] A. Aouacheria, V. Navratil, R. López-Pérez, NC. Gutiérrez, A. Churkin, D. Barash, D. Mouchiroud and C. Gautier: In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions. BMC Genomics, under revision.

 

[2] A. Churkin, D. Barash: Structural Analysis of Single Point Mutations Given an RNA Sequence: A Case Study with RNAMute. Special issue on methods in bioinformatics, EURASIP Journal of Applied Signal Processing, 56246:1-7, 2006.

 

[3] A. Churkin, D. Barash: RNAMute: RNA Secondary Structure Mutation Analysis Tool. BMC Bioinformatics, 7:221, 2006.

 

Conferences:

 

[1] A. Churkin, O. Peleg, D.Barash: Predictions of Single Point Mutations that substantially Alter the RNA Secondary Structure. A Symposium on current topics at the interface of molecular and computational biology and bioinformatics, 25-27 May, 2006: Vienna, Austria.

 

 [2] A. Churkin, O. Elgad, O. Petgho, D. Barash: RNAMute: RNA Secondary Structure Mutation Analysis Tool. Proceedings of the 4th International Computational Systems Bioinformatics Conference, August 8-11, 2005: Stanford, CA.

 

[3] A. Churkin, D. Barash: A Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin. Proceedings of the 1st IEEE Workshop on Computer Vision Methods for Bioinformatics at the International Conference on Computer Vision and Pattern Recognition (CVPR), June 20-25, 2005: San-Diego, CA.